Archaeplastida

Although many studies have suggested that the Archaeplastida form a monophyletic group,^[3] a 2009 paper argues that they are in fact paraphyletic.^[4] The enrichment of novel red algal genes in a recent study demonstrates a strong signal for Plantae (Archaeplastida) monophyly and an equally strong signal of gene sharing history between the red/green algae and other lineages.^[5] This study provides insight on how rich mesophilic red algal gene data is crucial for testing controversial issues in eukaryote evolution and for understanding the complex patterns of gene inheritance in protists.

The cells of the Archaeplastida typically lack brown algae, for instance) do not belong to Archaeplastida.

The archaeplastidans fall into two main evolutionary lines. The red algae are pigmented with chlorophyll a and phycobiliproteins, like most cyanobacteria. The green algae and land plants – together known as Viridiplantae (Latin for "green plants") or Chloroplastida – are pigmented with chlorophylls a and b, but lack phycobiliproteins. The glaucophytes have typical cyanobacterial pigments, and are unusual in retaining a cell wall within their plastids (called cyanelles).^[8]

Archaeplastida should not be confused with the older and obsolete name Archiplastideae, which refers to cyanobacteria and other groups of bacteria.^[9][10]

Taxonomy

The consensus in 2005, when the group consisting of the glaucophytes, red and green algae and land plants was named 'Archaeoplastida', was that it was a clade, i.e. was monophyletic. Many studies published since this date have provided evidence which is in agreement.^{[11][12][13][14]} On the other hand, other studies have suggested that the group is paraphyletic.^[4][7] To date, the situation appears unresolved, but a strong signal for Plantae (Archaeplastida) monophyly has been demonstrated in a recent study (with an enrichment of red algal genes).^[5] The assumption made here is that Archaeplastida is a valid clade.

Various names have been given to the group. Some authors have simply referred to the group as plants or Plantae.^[15][16] However, the name Plantae is ambiguous, since it has also been applied to less inclusive clades, such as Viridiplantae and embryophytes. To distinguish, the larger group is sometimes known as Plantae sensu lato ("plants in the broad sense").

To avoid ambiguity, other names have been proposed. Primoplantae, which appeared in 2004, seems to be the first new name suggested for this group.^[17]

Another name that has been applied to this node is Plastida, defined as the clade sharing "plastids of primary (direct prokaryote) origin [as] in Magnolia virginiana Linnaeus 1753".^[18]

The name Archaeplastida was proposed in 2005 by a large international group of authors (Adl et al.) who aimed to produce a classification for the eukaryotes which took into account morphology, biochemistry and phylogenetics, and which had "some stability in the near term." They rejected the use of formal taxonomic ranks in favour of a hierarchical arrangement where the clade names do not signify rank. Thus the phylum name 'Glaucophyta' and the class name 'Rhodophyceae' appear at the same level in their classification. The divisions proposed for the Archaeplastida are shown below in both tabular and diagrammatic form.^[8]

Archaeplastida:

• Glaucophyta Skuja, 1954 (Glaucocystophyta Kies & Kremer, 1986) – glaucophytes

Glaucophytes are a small group of freshwater single-celled algae. Their chloroplasts, called cyanelles, have a peptidoglycan layer, making them more similar to cyanobacteria than those of the remaining Archaeplastida.

• Rhodophyceae Thuret, 1855, emend. Rabenhorst, 1863, emend. Adl et al., 2005 (Rhodophyta Wettstein 1901) – red algae

Red algae form one of the largest groups of algae. Most are seaweeds, being multicellular and marine. Their red colour comes from phycobiliproteins, used as accessory pigments in light capture for photosynthesis.

• Chloroplastida Adl et al., 2005 (Viridiplantae Cavalier-Smith 1981; Chlorobionta Jeffrey 1982, emend. Bremer 1985, emend. Lewis and McCourt 2004; Chlorobiota Kendrick and Crane 1997)

Chloroplastida is the term chosen by Adl et al. for the group made up of the green algae and land plants (embryophytes). Except where lost secondarily, all have chloroplasts without a peptidoglycan layer and lack phycobiliproteins.

• • Chlorophyta Pascher, 1914, emend. Lewis & McCourt, 2004 – green algae (part)

Adl et al. employ a narrow definition of the Chlorophyta; other sources include the Chlorodendrales and Prasinophytae, which may themselves be combined.

• • Ulvophyceae Mattox & Stewart, 1984
  • Trebouxiophyceae Friedl, 1995 (Pleurastrophyceae Mattox et al. 1984; Microthamniales Melkonian 1990)
  • Chlorophyceae Christensen, 1994

• • Chlorodendrales Fritsch, 1917 – green algae (part)
  • Prasinophytae Cavalier-Smith, 1998, emend. Lewis & McCourt, 2004 – green algae (part)
  • Mesostigma Lauterborn, 1894, emend. McCourt in Adl et al., 2005 (Mesostigmata Turmel, Otis, and Lemieux 2002)
  • Charophyta Karol et al., 2001, emend. Lewis & McCourt, 2004 (Charophyceae Smith 1938, emend. Mattox and Stewart 1984) – green algae (part) and land plants

Charophyta sensu lato, as used by Adl et al., is a monophyletic group which is made up of some green algae, including the stoneworts (Charophyta sensu stricto), as well as the land plants (embryophytes).

• • Sub-divisions other than Streptophytina (below) were not given by Adl et al.

Other sources would include the green algal groups Chlorokybales, Klebsormidiales, Zygnematales and Coleochaetales.^[19]

• • Streptophytina Lewis & McCourt, 2004 – stoneworts and land plants

• • • • Charales Lindley 1836 (Charophytae Engler, 1887) – stoneworts
      • Plantae Haeckel 1866 (Cormophyta Endlicher, 1836; Embryophyta Endlicher, 1836, emend. Lewis & McCourt, 2004) – land plants (embryophytes)

Morphology

All archaeplastidans have plastids (chloroplasts) that carry out photosynthesis and are believed to be derived from captured cyanobacteria. In glaucophytes, perhaps the most primitive members of the group, the chloroplast is called a cyanelle and shares several features with cyanobacteria, including a peptidoglycan cell wall, that are not retained in other members of the group. The resemblance of cyanelles to cyanobacteria supports the endosymbiotic theory.

The cells of most archaeplastidans have walls, commonly but not always made of cellulose.

The Archaeplastida vary widely in the degree of their cell organization, from isolated cells to filaments to colonies to multi-celled organisms. The earliest were unicellular, and many groups remain so today. Multicellularity evolved separately in several groups, including red algae, ulvophyte green algae, and in the green algae that gave rise to stoneworts and land plants.

Endosymbiosis

Because the ancestral archaeplastidan is hypothesized to have acquired its chloroplasts directly by engulfing cyanobacteria, the event is known as a primary endosymbiosis (as reflected in the name chosen for the group 'Archaeplastida' i.e. 'ancient plastid'). Evidence for primary endosymbosis includes the presence of a double membrane around the chloroplasts; one membrane belonged to the bacterium, and the other to the eukaryote that captured it. Over time, many genes from the chloroplast have been transferred to the nucleus of the host cell. The presence of such genes in the nuclei of eukaryotes without chloroplasts suggests this transfer happened early in the evolution of the group.^[20]

Other eukaryotes with chloroplasts appear to have gained them by engulfing a single-celled archaeplastidan with its own bacterially-derived chloroplasts. Because these events involve endosymbiosis of cells that have their own endosymbionts, the process is called secondary endosymbiosis. The chloroplasts of such eukaryotes are typically surrounded by more than two membranes, reflecting a history of multiple engulfment. The chloroplasts of euglenids and chlorarachniophytes appear to be captured green algae, whereas those of other photosynthetic eukaryotes, such as heterokont algae, cryptophytes, haptophytes, and dinoflagellates, appear to be captured red algae.

Fossil record

Perhaps the most ancient remains of Archaeplastida are microfossils from the Roper group in northern Australia. The structure of these single-celled fossils resembles that of modern green algae. They date to the Mesoproterozoic Era, about 1500 to 1300 Ma (million years ago).^[21] These fossils are consistent with a molecular clock study that calculated that this clade diverged about 1500 Ma.^[22] The oldest fossil that can be assigned to a specific modern group is the red alga Bangiomorpha, from 1200 Ma.^[23]

In the late Neoproterozoic Era, algal fossils became more numerous and diverse. Eventually, in the Paleozoic Era, plants emerged onto land, and have continued to flourish up to the present.

References

External links

• Tree of Life Eukaryotes

Eukaryota Domain (Kingdom ) Bikonta AH/SAR AH Archaeplastida, or Plantae sensu lato Viridiplantae/Plantae sensu stricto Rhodophyta Glaucophyta Hacrobia, or non-SAR chromalveolata Haptophyta Cryptophyta Centroheliozoa SAR Halvaria Stramenopiles, or heterokonts Ochrophyta Bigyra Pseudofungi Alveolata Ciliates Myzozoa Apicomplexa Dinoflagellata Rhizaria Cercozoa Retaria Foraminifera Radiolaria Excavata Discoba Euglenozoa Jakobea Percolozoa Loukozoa Metamonad Malawimonas Apusozoa Apusomonadida Apusomonas Amastigomonas Ancyromonadida Ancyromonas Hemimastigida Hemimastix Spironema Stereonema Unikonta Amoebozoa Lobosea Conosa Phalansterium Breviata Opisthokonta Holozoa Mesomycetozoea Dermocystida Ichthyophonida Filozoa Filasterea Capsaspora Ministeria Choanoflagellate Codonosigidae Salpingoecidae Acanthoecidae Metazoa, or "Animalia" Eumetazoa Bilateria Cnidaria Ctenophora Mesozoa Dicyemida Orthonectida Parazoa Placozoa Porifera Holomycota Fungi Dikarya Ascomycota Basidiomycota Glomeromycota Zygomycota Blastocladiomycota Chytridiomycota Neocallimastigomycota Microsporidia Nucleariidae Nuclearia Micronuclearia Rabdiophrys Pinaciophora Pompholyxophrys Fonticula Incertae sedis Diphyllatea Collodictyon triciliatum Diphylleia rotans Sulcomonas lacustris Kamera lens Picozoa Sources: (2005)et al.Adl , (2012)et al.Adl , Cavalier-Smith (2008).

Classification of Archaeplastida / Plantae sensu lato Domain (Kingdom ) Rhodophyta (red algae) Cyanidiophyceae Porphyridiophyceae Compsopogonophyceae Stylonematophyceae Rhodellophyceae Bangiophyceae Florideophyceae Hildenbrandiales Acrochaetiales Nemaliales Batrachospermales Corallinales Gelidiales Gracilariales Ceramiales Glaucocystophyceae (glaucophytes) Glaucocystis Cyanophora Gloeochaete Viridiplantae/ Plantae sensu stricto Chlorophyta (green algae) Prasinophyceae UTC clade: Ulvophyceae Trebouxiophyceae Chlorophyceae Streptophyta Charophyta (green algae) Charales Chlorokybales Coleochaetales Klebsormidiales Mesostigmatales Zygnematales (including Desmidiales) Embryophyta/ Plantae sensu strictissimo Bryophytes (non-vascular) Marchantiophyta Anthocerotophyta Bryophyta "Moss" Horneophytopsida Tracheophyta (pteridophytes and seed plants) Lycopodiophyta Isoetopsida Isoetales Selaginellales Lycopodiopsida Lycopodiales Euphyllophyta Moniliformopses Equisetopsida Filicopsida Psilotopsida Spermatophyta: Gymnosperm Pinophyta Cycadophyta Ginkgophyta Gnetophyta Angiosperms

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